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Steven Berberich,
Ph.D., scans a DNA chip using microarray technology available in
the core facilities of the Center for Genomics Research (CGR).
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Wright
State Establishes
Center for Genomics Research
The Center for Genomics Research
(CGR) is the newest research center of excellence at Wright State University
School of Medicine. CGR's primary mission will be to provide support and
core facilities for Wright State research
faculty engaged in basic and clinical research in the areas of gene expression,
flow cytometry, and genotyping. Additionally, CGR will work to facilitate
research collaboration through its affiliation with the Genome
Research Infrastructure Partnership (GRIP), a regional consortium
of academic and commercial research centers in southwestern Ohio.
"In both missions the
goal will be to expedite our understanding of the genetic basis of human
diseases," says Steven J. Berberich, Ph.D., who has been appointed
CGR director. "The center will strive to cultivate collaborations
between basic and clinical researchers at Wright State. This may occur
through training of personnel, collaborative projects undertaken at CGR
or through joint grant submissions involving researchers and center members."
Dr. Berberich will be responsible
for the planning and coordination of CGR activities and will administer
the core facilities and budgets. Madhavi
Kadakia, Ph.D., CGR assistant director, will be responsible for supervising
the facilities' use on a day-to-day basis and will direct technical personnel
using the core facilities.
A Ph.D.-level researcher (postdoctoral
fellow) will be hired to undertake and monitor CGR's external genomics
research projects. Two full-time technicians will be responsible for performing
DNA microarray experiments and assisting in training CGR members in using
the core facilities.
Center membership will be
open to all WSU-affiliated faculty as well as faculty and scientific personnel
at GRIP member institutions (see table).
Like other SOM research centers,
CGR will charge investigator grants for use of certain equipment to offset
the costs for contracts, reagents and staff time required for equipment
maintenance. For groups not associated with WSU or GRIP, the center will
work on genomic research projects as a fee for service.
The new center of excellence
grew out of the Gene
Expression Laboratory (GEL), which was started in 2000 when Wright
State and Wright-Patterson Air Force Base invested in an Affymetrix GeneChip
System. The GeneChip system employs DNA microarrays capable of monitoring
global changes of gene expression, sequencing large regions of DNA or
genotyping polymorphic DNA loci.
Extramural funding from Ohio's
Biomedical Research Technology Transfer Fund $1.5 million) recently enabled
CGR to expand its genomics resources by purchasing equipment for high
level digital gel image analysis, RT-PCR and flow cytometry capabilities.
Recent Kettering Fund support
($0.5 million) will be used to expand CGR staff and facilitate a second
round of internal
genomics seed grants for Wright State faculty.
Later this spring, CGR and
the Berberich and Kadakia laboratories will move to a contiguous space
on the first floor of the Biological Sciences Building (phase II). The
move will make the core facilities more accessible to CGR members and
enhance opportunities for more informal meetings.
| CGR
Core Resource |
Applications |
| Affymetrix
GeneChip System |
Gene
expression profiling
Global human genotyping |
| ABI
7900 HT SDS w/ PCR clean room |
TaqMan
based RT-PCR
Syber green based RT-PCR
SNP genotyping |
| Agilent
Bioanalyzer 2100 |
RNA,
DNA and protein quantification |
| BD
FACScan |
Analysis
of cells based according to measurable properties (e.g DNA content,
cell surface markers) |
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